About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57067420_57068847_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57067420 - 57068847
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAACT
5'SS Class:
major
3'SS Sequence:
GCTTTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
CTTTCCTGACAG
Flanking Amino Acid:
EPVHLYKDVKDSIRDVHIKG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.7
36.1
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
73.3
0.53
1
68.7
37.3
Minor 5ss
42.3
-0.9
2.8
59.4
44.8
Minor BPS
50.2
-0.1
2
61.48
45.9

Associated Gene:

Gene:
NT5DC3
Ensembl Gene ID:
ENSAPLG00000013737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045326
57051942 - 57078306
26365
ENSAPLT00000033022
57051942 - 57090863
38922
ENSAPLT00000014345
57051942 - 57085081
33140