Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57069230_57069370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57069230 - 57069370

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TTGTCCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GTGTTAATAACC

Flanking Amino Acid:

FLITNSPSSFVDKGMKFIVG

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

70.6

35.4

Major BPS

84.4

0.85

34.5

Major PPT

82.8

0.74

0.8

81.5

30.4

Minor 5ss

-1.8

3.2

40.8

45.4

Minor BPS

50.4

-0

1.9

65.13

Associated Gene:

Gene:

NT5DC3

Ensembl Gene ID:

ENSAPLG00000013737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045326

57051942 - 57078306

26365

ENSAPLT00000033022

57051942 - 57090863

38922

ENSAPLT00000014345

57051942 - 57085081

33140