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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57069473_57070402_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57069473 - 57070402
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTGTGTAATT
Flanking Amino Acid:
DKPNFFNDKRRPFRKVNERG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.6
0.49
1
62.8
43.3
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
49.2
0.02
2.3
74.76
43.2

Associated Gene:

Gene:
NT5DC3
Ensembl Gene ID:
ENSAPLG00000013737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045326
57051942 - 57078306
26365
ENSAPLT00000033022
57051942 - 57090863
38922
ENSAPLT00000014345
57051942 - 57085081
33140