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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57072179_57072536_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57072179 - 57072536
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCATCCTTAATT
Flanking Amino Acid:
TLTGLLEHMQVHRDPDSQMI
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
78
0.96
1.2
81.66
39.9

Associated Gene:

Gene:
NT5DC3
Ensembl Gene ID:
ENSAPLG00000013737
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045326
57051942 - 57078306
26365
ENSAPLT00000033022
57051942 - 57090863
38922
ENSAPLT00000014345
57051942 - 57085081
33140