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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57085961_57086282_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57085961 - 57086282
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGGCCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTGCCCTCTACT
Flanking Amino Acid:
SFPTLTNFLSKIMAYSNSSR
Intron Amino Acid Position:
2323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60
44.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
72.1
0.5
0.9
65.9
40.9
Minor 5ss
40
-1.1
3.3
57.9
46.3
Minor BPS
57.5
0.32
1.9
78.36
43.4

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949