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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57086390_57086605_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57086390 - 57086605
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
TGGCCCACATGG
Flanking Amino Acid:
TWDVFCYREKEVNCTCKPGY
Intron Amino Acid Position:
2287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
81.2
0.7
0.9
77.7
36.7
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
36.3
-1.1
2.1
39.02
43.6

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650