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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57087725_57088088_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57087725 - 57088088
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGAAAT
U12 Branch Point Sequence:
TCTCTCTTTACA
Flanking Amino Acid:
DADCADLHFQDTTVGVFHLR
Intron Amino Acid Position:
2187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
47.3
-0.1
1.3
50.8
41.5
Major PPT
88.7
0.87
0.7
83.3
25.1
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
63.3
0.41
1.6
72.36
39.3

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949