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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57091852_57094379_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57091852 - 57094379
Intron Length:
2528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGCGTTTA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AACTTTATAAAT
Flanking Amino Acid:
LPGRYGSNCKLCECKNNGQC
Intron Amino Acid Position:
2004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
71.3
37.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
38.6
-1.3
3.1
47.5
42.1
Minor BPS
49.3
0.03
1.7
65.26
39.1

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949