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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57094530_57094791_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57094530 - 57094791
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACCC
5'SS Class:
major
3'SS Sequence:
CAACACTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTCTCTTTAAAA
Flanking Amino Acid:
CKGYFGPDCQACPGGPETPC
Intron Amino Acid Position:
1954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
63.4
41.4
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
70.6
0.46
1
65.7
40.1
Minor 5ss
31.8
-2.1
3.3
42.8
44.3
Minor BPS
68.9
0.59
1.4
71.99
40.5

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949