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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57098786_57099121_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57098786 - 57099121
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCTCCTGACTA
Flanking Amino Acid:
IQDFPPGPKKESLKMVAAKH
Intron Amino Acid Position:
1736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.6
0.78
0.7
80.4
24.8
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
55.4
0.17
1.7
66.36
40.5

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949