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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57099254_57099669_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57099254 - 57099669
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGGG
5'SS Class:
major
3'SS Sequence:
GTTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAAAAT
U12 Branch Point Sequence:
TTCCACAGAAAA
Flanking Amino Acid:
GDQIQITYSQNSVYLNNKAE
Intron Amino Acid Position:
1692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
60.8
44.4
Major BPS
48.6
-0
1.2
53.4
38.7
Major PPT
81
0.7
0.9
77.2
37
Minor 5ss
35.4
-1.7
3.4
47.6
47.9
Minor BPS
43.8
-0.4
1.9
57.71
40.6

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949