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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57099817_57099894_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57099817 - 57099894
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TGCATCTCAACT
Flanking Amino Acid:
HTDVLNSNPQVRDWLAKGEM
Intron Amino Acid Position:
1643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
81.2
0.7
0.8
75.8
32.7
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
59.3
0.37
1.6
73.53
43

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949