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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57101148_57101521_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57101148 - 57101521
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAA
U12 Branch Point Sequence:
TTTGCAGCAATG
Flanking Amino Acid:
GFKCRGNIYQELLRDSNTSR
Intron Amino Acid Position:
1599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
56
0.15
1.3
65.4
38
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
42.5
-0.7
2.4
56.49
45.2

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949