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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5710317_5711023_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5710317 - 5711023
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACC
5'SS Class:
major
3'SS Sequence:
ATCCTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCCTTTTAACA
Flanking Amino Acid:
LDKMMLENLQQRSGESVKVH
Intron Amino Acid Position:
1154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
67.6
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.9
73
35.4
Minor 5ss
40.2
-1.1
2.9
53
43.8
Minor BPS
67.4
0.54
1.2
70.42
35.8

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513
ENSAPLT00000039255
5694207 - 5750136
55930