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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57105774_57107270_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57105774 - 57107270
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CACCCCTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTTGTTTAATC
Flanking Amino Acid:
GFTGNGTFCTAIDACETNNG
Intron Amino Acid Position:
1468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
68.2
0.41
0.9
64.7
36
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
67.2
0.52
1.7
76.18
34.5

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949