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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57107348_57108049_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57107348 - 57108049
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GACTTTTTAATG
Flanking Amino Acid:
ACNTSCHTSANCLLLSNGTA
Intron Amino Acid Position:
1442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.1
0.54
0.9
65.9
40.8
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
60.2
0.18
1.3
56.24
40

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949