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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57108096_57109055_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57108096 - 57109055
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAAGCTCTGATT
Flanking Amino Acid:
VGWRGVTCESEIKEDACNTS
Intron Amino Acid Position:
1427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
46.4
-0.2
1.7
59.15
38.2

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949