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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57109152_57109681_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57109152 - 57109681
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCATTCTAAACA
Flanking Amino Acid:
EGKYGRNCDQVCACVHGKCS
Intron Amino Acid Position:
1395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
58.9
46
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
37.1
-1.5
3.3
52.2
44.6
Minor BPS
58.3
0.26
1.7
64.26
42.1

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949