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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57109878_57110391_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57109878 - 57110391
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGCCCCTCAGCA
Flanking Amino Acid:
CQPKCAKTIITRECCAGFFG
Intron Amino Acid Position:
1330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
79.6
0.67
0.8
73.2
31.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
49.8
-0
1.8
62.35
43.3

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949