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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5711123_5712427_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5711123 - 5712427
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTGTT
5'SS Class:
major
3'SS Sequence:
TCCATTGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
KENETDEENTEVMIKGGGLK
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
72
37.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
65.4
0.35
1
61.3
38.8
Minor 5ss
46.9
-0.3
3.2
71.8
39.2
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930