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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57117232_57117338_R

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
57117232 - 57117338
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
DYSIFRGYIIQYGLANEIEA
Intron Amino Acid Position:
1157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
71.5
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
1
67.7
37.7
Minor 5ss
54.7
0.16
2.7
74.2
36.2
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949