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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57117432_57117604_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57117432 - 57117604
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGGC
5'SS Class:
major
3'SS Sequence:
GCCCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CATGTATTGACG
Flanking Amino Acid:
TNGIIHVIDKVLTPLRSTVM
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.6
38.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.3
0.68
0.8
71.8
38.1
Minor 5ss
38.5
-1.3
3.2
52.5
44.7
Minor BPS
47.5
-0.3
1.8
51.69
43

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949