About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57117683_57118640_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57117683 - 57118640
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGATGA
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAA
U12 Branch Point Sequence:
AGTGCCAAAGCA
Flanking Amino Acid:
NFLHLSKENGNLTVEGAHIV
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
37.9
Major BPS
45
-0.3
1.2
49.8
35.1
Major PPT
83.4
0.75
0.7
80.4
24.9
Minor 5ss
31.4
-2.1
3
30
43
Minor BPS
42.7
-0.5
2.1
55.54
43.1

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949