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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57125121_57126124_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57125121 - 57126124
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCATCGCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTCCTCTCATCT
Flanking Amino Acid:
ADCQLSNGAVSCVCKPGYEG
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.5
0.48
0.9
65.4
36.2
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
47.9
-0
1.8
64.89
45.6

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949