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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5712533_5713866_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5712533 - 5713866
Intron Length:
1334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTCAAAT
Flanking Amino Acid:
ESEVNEPEEEEGSDNEEEEG
Intron Amino Acid Position:
1086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.5
0.53
1
69.6
45.6
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
65.6
0.57
1.6
82.48
38.2

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513