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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57126306_57127544_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57126306 - 57127544
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
PGKYGPQCDKKCLCVYGKCD
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.5
0.57
1
74.1
36.4
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650