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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57135396_57136104_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57135396 - 57136104
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGACT
5'SS Class:
major
3'SS Sequence:
CTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GGGCTAAGAAAT
Flanking Amino Acid:
EAMDYLLSAEGSWKLLELVR
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.6
40.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
33.2
-1.9
3.5
49.6
46.4
Minor BPS
37.1
-0.9
1.7
47.82
37

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012514
57079799 - 57164747
84949
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650