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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57136388_57137050_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57136388 - 57137050
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACGT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCATCTTATTT
Flanking Amino Acid:
IEPTFESNKEETIMSVLQDN
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
71.5
40.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
76.5
0.6
0.8
74.3
34.8
Minor 5ss
28.2
-2.5
3.1
39.3
45.9
Minor BPS
60.2
0.4
1.6
75.79
41.6

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949