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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57139393_57142079_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57139393 - 57142079
Intron Length:
2687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCCTTATAA
Flanking Amino Acid:
GKLTSALSLMENVYEWPLSN
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
1
76.3
31.1
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
66.7
0.52
1.7
76.59
40.5

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949