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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5714007_5717824_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5714007 - 5717824

Intron Length:

3818

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CTCCAATCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

DLEREFLIKLGLVNDKDSKD

Intron Amino Acid Position:

1039

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

72.7

0.51

0.9

64.9

35.1

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

UPF2

Ensembl Gene ID:

ENSAPLG00000010287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010758

5694207 - 5751719

57513

ENSAPLT00000039255

5694207 - 5750136

55930

ENSAPLT00000020497

5694207 - 5750136

55930

ENSAPLT00000019447

5694207 - 5754202

59996