Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57147618_57148622_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57147618 - 57148622

Intron Length:

1005

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTGATGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TCCTCTTCCATC

Flanking Amino Acid:

TVCIYDGPGKSHCECKEHYT

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

86.4

29.2

Major BPS

0.72

38.9

Major PPT

0.36

0.9

61.2

34.1

Minor 5ss

-1.7

3.3

46.3

Minor BPS

47.4

-0.2

1.9

57.42

42.5

Associated Gene:

Gene:

STAB2

Ensembl Gene ID:

ENSAPLG00000011843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012514

57079799 - 57164747

84949

ENSAPLT00000019837

57079799 - 57164747

84949

ENSAPLT00000019418

57085098 - 57164747

79650