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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57148820_57150541_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57148820 - 57150541
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
AATTCCTTTACT
Flanking Amino Acid:
NYHGDGTHCEPINPCSKKVC
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83.1
30.9
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
86.6
0.82
0.9
86.9
31.1
Minor 5ss
33.3
-1.9
2.8
41.6
38.3
Minor BPS
76.4
0.91
1.5
87.87
37

Associated Gene:

Gene:
STAB2
Ensembl Gene ID:
ENSAPLG00000011843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019837
57079799 - 57164747
84949
ENSAPLT00000019418
57085098 - 57164747
79650
ENSAPLT00000012514
57079799 - 57164747
84949