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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5720158_5720680_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5720158 - 5720680

Intron Length:

523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATCCT

5'SS Class:

strong_major

3'SS Sequence:

AAATGTGATTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTGTCTTAAAAT

Flanking Amino Acid:

KDLSKVTTEKVLRQMRKLPW

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

77.8

36.9

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

56.2

0.14

1.1

52.2

46.3

Minor 5ss

36.2

-1.6

3.1

51.2

45.2

Minor BPS

63.2

0.49

1.8

80.75

41.3

Associated Gene:

Gene:

UPF2

Ensembl Gene ID:

ENSAPLG00000010287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039255

5694207 - 5750136

55930

ENSAPLT00000020497

5694207 - 5750136

55930

ENSAPLT00000019447

5694207 - 5754202

59996

ENSAPLT00000010758

5694207 - 5751719

57513