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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5720867_5725856_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5720867 - 5725856
Intron Length:
4990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTTATT
Flanking Amino Acid:
ESHLRTSVLLEQMMRKKQAM
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.5
0.73
0.9
73.7
40.5
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
58.5
0.35
2
82.3
38.6

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513