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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5725974_5727097_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5725974 - 5727097

Intron Length:

1124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTGTT

5'SS Class:

major

3'SS Sequence:

AAATGTATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTTATATAAAT

Flanking Amino Acid:

SKNDTLHCLKMLLSDFSHHH

Intron Amino Acid Position:

717

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.2

77.3

37.8

Major BPS

79.2

0.73

75.3

39.4

Major PPT

66.9

0.38

1.1

55.9

47.6

Minor 5ss

33.6

-1.9

3.5

49.5

46.8

Minor BPS

58.6

0.35

1.9

83.5

36.8

Associated Gene:

Gene:

UPF2

Ensembl Gene ID:

ENSAPLG00000010287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019447

5694207 - 5754202

59996

ENSAPLT00000010758

5694207 - 5751719

57513

ENSAPLT00000039255

5694207 - 5750136

55930

ENSAPLT00000020497

5694207 - 5750136

55930