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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57266138_57275733_F

Intron Information:

Intron Rank:
140615
Intron Class:
major
Intron Phase:
Intron Coordinates:
57266138 - 57275733
Intron Length:
9596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAATAAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTATATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
77.7
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
77.9
35.9
Minor 5ss
30.8
-2.2
2.5
34
41.4
Minor BPS
51.6
0.13
1.8
69.24
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020202
57265012 - 57275888
10877