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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_572695_582978_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
572695 - 582978
Intron Length:
10284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTTCTGAGGC
Flanking Amino Acid:
PKREEEEDFIRAAFGKESEV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
48.4
-0.1
2
63.67
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030366
524146 - 629157
105012