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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5727212_5728462_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5727212 - 5728462
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
ACAGCCTAAAAT
Flanking Amino Acid:
SMLKGDFRFHVRKKDQINIE
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
82.6
30.5
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
89.2
0.88
0.6
88.7
20.6
Minor 5ss
66.3
0.55
2.2
79.9
33.6
Minor BPS
49.2
0.02
1.9
64.24
45.8

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513