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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57294667_57311995_F

Intron Information:

Intron Rank:
132951
Intron Class:
major
Intron Phase:
Intron Coordinates:
57294667 - 57311995
Intron Length:
17329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTATTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
51.9
0.04
1.6
60.47
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021532
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025615
57290997 - 57313051
22055