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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57315852_57362039_F

Intron Information:

Intron Rank:
126646
Intron Class:
major
Intron Phase:
Intron Coordinates:
57315852 - 57362039
Intron Length:
46188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
0.9
69.2
35.5
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
59.7
0.38
1.5
75.48
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018266
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046775
57315443 - 57382351
66909