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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57336127_57337567_F

Intron Information:

Intron Rank:
126643
Intron Class:
major
Intron Phase:
Intron Coordinates:
57336127 - 57337567
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
77.8
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
41.3
-1
3.1
56.9
41
Minor BPS
76.9
0.93
1.5
90.44
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018266
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043458
57336106 - 57378762
42657