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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5734220_5734781_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5734220 - 5734781
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTATTTTGACT
Flanking Amino Acid:
NCVNRDLIDKAAMDFCMNMN
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.3
36
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89.5
0.89
0.6
84.3
23.7
Minor 5ss
42.5
-0.8
3.1
56.5
47.9
Minor BPS
68.3
0.66
1.2
81.39
33.8

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010758
5694207 - 5751719
57513
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000020497
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996