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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5734886_5737408_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5734886 - 5737408
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GTTTATTTCACT
Flanking Amino Acid:
DSSDGKQAERKQEDEEASTG
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
69.6
0.44
1
69.8
36.5
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
60.2
0.4
1.9
81.57
39.9

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513