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Intron Name: Anas_platyrhynchos_platyrhynchos_1_5734886_5739418_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5734886 - 5739418

Intron Length:

4533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCACTCTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

GTTTATTTCACT

Flanking Amino Acid:

DLTKKLLDEQEQEDEEASTG

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

74.1

36.4

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

69.6

0.44

69.8

36.5

Minor 5ss

32.2

-2

40.7

45.1

Minor BPS

60.2

0.4

1.9

81.57

39.9

Associated Gene:

Gene:

UPF2

Ensembl Gene ID:

ENSAPLG00000010287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020497

5694207 - 5750136

55930