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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_5737472_5739418_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5737472 - 5739418
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCAATATGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
DLTKKLLDEQGKREGADSTG
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
64.6
0.33
1
61.9
43.2
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
UPF2
Ensembl Gene ID:
ENSAPLG00000010287
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039255
5694207 - 5750136
55930
ENSAPLT00000019447
5694207 - 5754202
59996
ENSAPLT00000010758
5694207 - 5751719
57513