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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57397944_57400186_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57397944 - 57400186
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAACTACA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTGAACTTAAAA
Flanking Amino Acid:
MPWQEHLKNESMYIEEPSN
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
73.6
37
Major BPS
69
0.47
1
69.9
32.6
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
44
-0.7
2.6
56.9
40.5
Minor BPS
54.7
0.14
1.7
63.77
41.6

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406