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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57400295_57409993_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57400295 - 57409993
Intron Length:
9699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACCAA
U12 Branch Point Sequence:
TCTTTCTCATAG
Flanking Amino Acid:
ALAKVLRTFEEKGINLTHIE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
49.4
-0
1.3
59.1
37.3
Major PPT
79.8
0.67
0.7
75.8
26.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
47.4
-0.3
1.9
56.29
45.1

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406