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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57410178_57416401_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57410178 - 57416401
Intron Length:
6224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAA
U12 Branch Point Sequence:
AGAAGCATACCA
Flanking Amino Acid:
ELSRTKKKDTVPWFPRSIQE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
78.4
37.9
Major BPS
49.3
-0
1.3
57.4
35.7
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
43.4
-0.7
2.9
58.5
45.8
Minor BPS
40.5
-0.7
2.1
49.44
40.7

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406