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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57418706_57421538_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57418706 - 57421538
Intron Length:
2833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TATTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ATATCCGTATTT
Flanking Amino Acid:
EFADIAYNYRHGQPIPRVTY
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
51.4
0.12
2.2
75.08
42

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406