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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_57421736_57422158_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57421736 - 57422158
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTGCTTTTAACA
Flanking Amino Acid:
QLEDISKFLQTCTGFRLRPV
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
65
0.47
1.3
67.7
39.3

Associated Gene:

Gene:
PAH
Ensembl Gene ID:
ENSAPLG00000011061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011541
57397386 - 57432791
35406